FastQCFastQC Report
Wed 8 May 2024
EGAF00007962798

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962798
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences465636
Total Bases19 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT13200.283483235832281No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCG10260.22034378785145478No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG9540.20488106589696672No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG8400.18039842280236065No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA7690.16515046087501825No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGA5850.12563461588021546No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT5470.11747373484868008No Hit
GGTATCGGAAGAGTCGTCATCCTCTTCTTCGGAGTCTTCTA4770.10244053294848336No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)