FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007962799

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962799
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences465636
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC13130.2819799156422614No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAGCC10330.22184710804147445No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC10030.2154043072271044No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG9210.1977939850011597No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT8600.184693623345274No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC8410.1806131828295063No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT8230.1767475023408843No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG7280.1563452997620459No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACAAC6210.13336597685745946No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGAGC5990.1286412562602548No Hit
CGTATGCCGACTACTAGCACCGCTTCCCAGAAC5820.12499033579877845No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGTCC5760.12370177563590444No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT5720.12284273552732178No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5380.11554089460436907No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGAGC5190.11146045408860139No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAACTG5160.1108161740071644No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)