FastQCFastQC Report
Wed 8 May 2024
EGAF00007962800

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962800
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences456383
Total Bases18.7 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT12710.2784941595107618No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCG10190.22327737886818746No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG9530.20881584108084655No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG8670.18997201911552358No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA7180.15732400198955704No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGA6150.13475523847294926No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT5210.11415850283643345No Hit
GGTATCGGAAGAGTCGTCATCCTCTTCTTCGGAGTCTTCTA5140.1126247033741397No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTA4700.10298367818257911No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCA4570.10013519346689076No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)