FastQCFastQC Report
Wed 8 May 2024
EGAF00007962801

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962801
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences456383
Total Bases15 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21810.47788808960894685No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC12530.2745501037505779No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAGCC10230.2241538357037839No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC9720.21297901104992953No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG9390.20574824215625911No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT8440.18493239231084418No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC8000.1752913671192836No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT7770.1702517403146042No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG7580.1660885703455212No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACAAC6690.1465874057535009No Hit
CGTATGCCGACTACTAGCACCGCTTCCCAGAAC6120.13409789584625195No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGAGC6030.13212586796616No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGTCC5650.12379952802799403No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT5300.11613053071652538No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGAGC5250.11503495967202985No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAACTG4970.10889976182285492No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)