FastQCFastQC Report
Wed 8 May 2024
EGAF00007962802

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962802
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences468199
Total Bases19.1 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG18910.4038880903205688No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT18670.3987620648484939No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT13530.288979685988223No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT10390.22191418606190955No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGT9770.20867195359238275No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA9580.20461385009365676No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT9010.19243953959747886No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG8840.18880860488809245No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT8560.1828282418373384No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG7610.16253772434370856No Hit
CTGGGAGGTCAGGAACACCAGGTAGCTGCGCTGAGCTTCAC6880.14694606353281406No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGT6710.14331512882342765No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC6640.14182003806073915No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTT6500.1388298565353621No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA6390.13648042819399442No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT6240.1332766622739476No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC6170.1317815715112591No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTG6010.1283642211965425No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT5970.12750988361786333No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT5900.12601479285517483No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGC5380.11490840433234586No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGAC5260.1123453915963084No Hit
TTCGCGGGCACGCTGCAGGATCGCGTGCTGTTGGTCCATCG4990.10657861294022412No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)