FastQCFastQC Report
Wed 8 May 2024
EGAF00007962803

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962803
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences468199
Total Bases15.4 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT25310.540582102909233No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG21380.4566434358040064No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG19220.41050920655533224No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC14550.3107652942445413No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT13740.2934649582762885No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA11590.2475443134222841No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC10250.21892400453653255No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC9350.19970140901625164No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT8980.19179878641346948No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG8230.17577995681323538No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC7870.16809091860512304No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT7730.165100737079746No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTGAA7370.15741169887163364No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGGCC7200.15378076416224726No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGCAG6980.14908190747951192No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTGAC6780.14481021958611617No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACCAC6420.1371211813780038No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGGAA6420.1371211813780038No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC6320.13498533743130592No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC6310.13477175303663613No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT6240.1332766622739476No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT5920.1264419616445144No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT5860.12516045527649566No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGTTC5830.12451970209248632No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTCGT5600.11960726101508119No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGGCT5450.11640349509503438No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5300.11319972917498757No Hit
AAACTGTCCTCTGGCTACCGCATCAACCGTGCT5160.11020954764961054No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAACTG4910.10486993778286582No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)