FastQCFastQC Report
Wed 8 May 2024
EGAF00007962804

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962804
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences455268
Total Bases18.6 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT18010.39559116827890384No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG17260.3791173550524087No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT12430.27302599787377985No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT10210.22426351072335418No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGT9490.20844865002591878No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA9420.20691109412477926No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT8970.19702680618888216No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG8360.1836281047646661No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT7940.17440276935782878No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG7690.1689114982823304No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC6690.14694641398033684No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGT6650.1460678106082571No Hit
CTGGGAGGTCAGGAACACCAGGTAGCTGCGCTGAGCTTCAC6350.13947828531765905No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT6330.13903898363161918No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC6270.13772107857349958No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA6050.132888760027061No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTT5930.13025294991082176No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT5850.1284957431666623No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT5630.12366342462022369No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTG5550.1219062178760642No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGAC5390.11839180438774524No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTA5090.11180227909714717No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGC4860.10675030970768865No Hit
TTCGCGGGCACGCTGCAGGATCGCGTGCTGTTGGTCCATCG4770.10477345212050923No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)