FastQCFastQC Report
Wed 8 May 2024
EGAF00007962805

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962805
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences455268
Total Bases15 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22860.5021218271435726No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT22760.49992531871337326No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG21160.4647811838301835No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG18570.4078916154880203No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT13610.29894479735013224No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC13510.2967482889199329No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA10860.23854081551964995No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC9820.21569712784557668No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC8890.19526959944472266No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT8440.18538531150882556No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG8090.17769753200312782No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT7480.16429883057891176No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC7220.15858790866039343No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTGAA6790.14914292241053623No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGGCC6770.14870362072449633No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGCAG6550.14387130217805777No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACCAC6480.14233374627691822No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT6360.139697936160679No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTGAC6220.13662282435839987No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGTTC5960.13091190243988157No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC5880.12915469569572208No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT5810.12761713979458253No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTCGT5800.12739748895156258No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGGAA5760.12651888557948285No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC5740.12607958389344298No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT5740.12607958389344298No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGGCT5220.11465774005640635No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAACTG5010.11004507235298769No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTACC4970.10916646898090794No Hit
AAACTGTCCTCTGGCTACCGCATCAACCGTGCT4740.10411449959144943No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)