FastQCFastQC Report
Wed 8 May 2024
EGAF00007962806

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962806
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences470195
Total Bases19.2 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT18820.4002594668169589No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG18580.39515520156530803No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT12770.2715894469315922No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT9970.21203968566233158No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGT9770.20778613128595586No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA9670.20565935409776795No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT9400.19991705568966067No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG8780.18673103712289582No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG8300.176522506619594No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT7910.16822807558566127No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGT7030.14951243632960792No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC6920.14717298142260124No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA6670.14185603845213154No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT6390.1359010623252055No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTT6330.13462499601229277No Hit
CTGGGAGGTCAGGAACACCAGGTAGCTGCGCTGAGCTTCAC6080.12930805304182308No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTG6040.12845734216654792No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT5820.12377843235253458No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT5820.12377843235253458No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGAC5790.12314039919607822No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC5640.11995023341379642No Hit
TTCGCGGGCACGCTGCAGGATCGCGTGCTGTTGGTCCATCG5250.11165580237986368No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGC4910.1044247599400249No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCT4900.10421208222120609No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)