FastQCFastQC Report
Wed 8 May 2024
EGAF00007962807

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962807
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences470195
Total Bases15.5 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT24750.5263773540765002No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG22720.4832037771562862No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG19670.4183370729165559No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC14020.29817416178394074No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT13410.28520082093599464No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA11750.24989631961207584No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC9920.21097629706823764No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC9720.2067227426918619No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG8880.1888578143110837No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT8420.17907463924541944No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC7810.1661012983974734No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT7620.16206042173991642No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTGAA7380.1569561564882655No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGGCC7120.15142653579897702No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACCAC6940.14759833686023882No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT6610.14057997213921883No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTGAC6460.137389806356937No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGCAG6220.1322855411052861No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC6200.13186018566764854No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGGAA6120.13015876391709824No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT5960.12675592041599762No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC5920.12590520954072248No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGTTC5800.123353076914897No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT5730.1218643328831655No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTCGT5700.12122629972670913No Hit
AAACTGTCCTCTGGCTACCGCATCAACCGTGCT5400.1148459681621455No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGGCT5290.11250651325513883No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5170.10995438062931337No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGAAA4760.10123459415774307No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)