FastQCFastQC Report
Wed 8 May 2024
EGAF00007962808

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962808
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences459060
Total Bases18.8 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG18260.3977693547684399No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT17890.38970940617784167No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT12600.2744739249771272No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT9940.21652942970417807No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA9660.21043000914913085No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGT9430.20541977083605628No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT8840.1925674203807781No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG8320.18123992506426176No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT8180.17819021478673813No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG7280.15858493443122904No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA6910.15052498584063084No Hit
CTGGGAGGTCAGGAACACCAGGTAGCTGCGCTGAGCTTCAC6600.14377205594039993No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC6510.14181152790484905No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGT6460.1407223456628763No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC6270.13658345314337994No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTT6080.1324445606238836No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT5900.12852350455278178No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTG5880.1280878316559927No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT5690.12394893913649631No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGC5520.12024571951378905No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT5500.11981004661699997No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCT5460.11893870082342177No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGAC5240.11414629895874179No Hit
TTCGCGGGCACGCTGCAGGATCGCGTGCTGTTGGTCCATCG4740.10325447653901451No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)