FastQCFastQC Report
Wed 8 May 2024
EGAF00007962809

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962809
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences459060
Total Bases15.1 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT24830.5408879013636562No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG21950.4781510042260271No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21750.4737942752581362No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG18190.396244499629678No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT13770.29996078943928894No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC13450.2929900230906635No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA11360.24746220537620353No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC9650.2102121727007363No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC8920.1943101119679345No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT8710.18973554655164904No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG7750.16882324750577266No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC7650.16664488302182723No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT7500.16337733629590903No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGGCC6960.15161416808260358No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGCAG6710.14616825687273996No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTGAA6550.14268287369842722No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTGAC6270.13658345314337994No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACCAC6170.13440508865943449No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGTTC6050.13179105127869994No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTCGT6000.13070186903672723No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT5990.1304840325883327No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC5950.12961268679475452No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC5890.12830566810438723No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT5730.12482028493007451No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGGAA5730.12482028493007451No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT5220.11371062606195267No Hit
AAACTGTCCTCTGGCTACCGCATCAACCGTGCT4950.10782904195529995No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAACTG4900.10673985971332722No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGGCT4720.10281880364222541No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)