FastQCFastQC Report
Wed 8 May 2024
EGAF00007962818

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962818
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences487550
Total Bases19.9 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT9450.1938262742282843No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG8340.17105937852527944No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT7870.16141934160598914No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGA6780.13906266023997538No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT6370.13065326633165827No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT5320.10911701363962671No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT5000.10255358424776945No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA4960.1017331555737873No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG4940.10132294123679624No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)