FastQCFastQC Report
Wed 8 May 2024
EGAF00007962819

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962819
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences487550
Total Bases16 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG23450.4809763101220388No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG10950.2245923495026151No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT10340.2120808122243872No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG9860.20223566813660138No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC7880.16162444877448467No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC7050.14460055378935494No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGATG6520.13372987385909138No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC5400.11075787098759102No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT5010.102758691416265No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC4890.10029740539431853No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)