FastQCFastQC Report
Wed 8 May 2024
EGAF00007962820

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962820
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences503800
Total Bases20.6 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT9930.19710202461294163No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG9270.18400158793171895No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT7940.1576022231044065No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGA6570.13040889241762604No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT6420.1274315204446209No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT5700.1131401349741961No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA5500.10917030567685589No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT5080.10083366415244144No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)