FastQCFastQC Report
Wed 8 May 2024
EGAF00007962821

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962821
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences503800
Total Bases16.6 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG12290.24394601032155616No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT11850.2352123858674077No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG10010.19868995633187775No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC7940.1576022231044065No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC7200.14291385470424772No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGATG6610.1312028582770941No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6210.12326319968241366No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC6200.12306470821754664No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT5280.10480349344978165No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)