FastQCFastQC Report
Wed 8 May 2024
EGAF00007962822

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962822
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences491379
Total Bases20.1 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT9840.2002527580543735No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG8760.17827379680450325No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT7860.1599579957629447No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT6690.13614745440891857No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGA6580.13390885650383919No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT5310.10806322614519547No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA5180.10541761043919257No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG4940.10053339682811029No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT4920.10012637902718675No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)