FastQCFastQC Report
Wed 8 May 2024
EGAF00007962823

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962823
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences491379
Total Bases16.2 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG23590.48007749618929585No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG11590.2358668156351818No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT11150.22691242401486428No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG9930.2020843381585294No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC7840.15955097796202117No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC7100.1444913193278508No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGATG6510.13248429420060687No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC5390.10969129734888956No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT4980.10134743242995732No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)