FastQCFastQC Report
Wed 8 May 2024
EGAF00007962827

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962827
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences487807
Total Bases16 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT7190.14739435883453908No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC5420.11110951667360246No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5350.10967452291582533No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG5130.10516454253423997No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)