FastQCFastQC Report
Wed 8 May 2024
EGAF00007962830

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962830
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences440807
Total Bases18 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA19720.44736131685749086No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG17980.4078882594877123No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT11460.25997772267681774No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTT9420.2136989657605256No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG8880.2014487065768012No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC8080.18330017445276503No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT7870.17853618477020555No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG7720.17513333499694878No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCT7630.17309162513299473No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA6730.15267452649345406No Hit
CTGGGAGGTCAGGAACACCAGGTAGCTGCGCTGAGCTTCAC6040.13702141753647287No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT5920.13429913771786745No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT5730.12998886133840887No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT5690.12908143473220707No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCT5290.120007168670189No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCG5100.11569689229073042No Hit
TGGACCGGTAACCGGACGGCCACGACGGCCGTTATCGAACA5090.11547003563917996No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGG4900.11115975925972137No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT4700.10662262622871234No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCA4640.10526148631940964No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT4550.10321977645545556No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTG4440.1007243532884006No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)