FastQCFastQC Report
Wed 8 May 2024
EGAF00007962831

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962831
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences440807
Total Bases14.5 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG44191.0024795432014464No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC11430.25929715272216636No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT10020.2273103648535527No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG9490.21528696232137873No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAATCT8750.1984995701066453No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT8490.19260129716633356No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC8300.18829102078687499No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT8190.18579559761982No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG8040.18239274784656323No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAATCC7700.17467962169384788No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGCAG6260.14201226387058283No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC6100.1383825574457756No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT6000.13611399093027107No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC5920.13429913771786745No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAACTG5400.12250259183724395No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAACTG5220.11841917210933582No Hit
AACGACCTGTACCGCCGCGTGATCAATCGTAAC5210.11819231545778539No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAAGC5060.11478946568452861No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT4860.11025233265351955No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAACTG4740.10753005283491415No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG4680.10616891292561143No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA4670.10594205627406099No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC4590.10412720306165738No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTGGT4510.10231234984925375No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACAAC4420.1002706399852997No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)