FastQCFastQC Report
Wed 8 May 2024
EGAF00007962832

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962832
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences426694
Total Bases17.4 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA19740.4626266129826058No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG17550.4113017759799763No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT11250.2636549846025489No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTT8880.2081116678462786No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG8250.19334698870853587No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG7850.1839725892560008No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT7730.18116026942024027No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCT7360.17248894992664535No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA6950.1628801904877969No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC6950.1628801904877969No Hit
CTGGGAGGTCAGGAACACCAGGTAGCTGCGCTGAGCTTCAC5890.13803803193857894No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT5690.1333508322123114No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT5490.12866363248604384No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCT5130.12022667297876229No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT4810.11272715341673423No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT4680.10968047359466034No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGG4640.10874303364940684No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCG4500.10546199384101956No Hit
TGGACCGGTAACCGGACGGCCACGACGGCCGTTATCGAACA4450.10429019390945267No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTG4410.10335275396419917No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT4290.10054043412843865No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)