FastQCFastQC Report
Wed 8 May 2024
EGAF00007962833

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962833
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences426694
Total Bases14 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG44271.0375116594093192No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG20600.4827815718055562No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC10900.2554523850815807No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT10080.23623486620388381No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG8640.20248702817475756No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC8440.19779982844849003No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG7720.1809259094339269No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAATCT7550.17694178966659949No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT7310.17131714999507844No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT7290.17084843002245167No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAATCC7120.16686431025512427No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGCAG5960.13967855184277256No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT5760.13499135211650504No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC5740.13452263214387827No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC5090.11928923303350879No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAACTG5080.11905487304719542No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAACTG4990.11694563317037503No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAAGC4980.11671127318406165No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT4940.11577383323880815No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAACTG4630.10850867366309346No Hit
AACGACCTGTACCGCCGCGTGATCAATCGTAAC4520.10593071381364633No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACAAC4410.10335275396419917No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC4410.10335275396419917No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTGGT4330.10147787407369215No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)