FastQCFastQC Report
Wed 8 May 2024
EGAF00007962834

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962834
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences441318
Total Bases18 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA20820.4717686566149579No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG18540.4201052302421383No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT10990.24902677887600325No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTT9100.20620051754063964No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG8370.18965915734232458No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG8220.18626024771253383No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT7700.17447736099592584No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC7590.1719848272674126No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCT7400.1676795417363443No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA6870.15567006104441694No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT6260.14184782854993452No Hit
CTGGGAGGTCAGGAACACCAGGTAGCTGCGCTGAGCTTCAC5790.13119791170992345No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCT5660.12825219003077146No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT5550.12575965630225822No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT4950.11216401778309519No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGG4890.11080445393117887No Hit
TGGACCGGTAACCGGACGGCCACGACGGCCGTTATCGAACA4790.10853851417798503No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCG4740.10740554430138811No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTG4520.10242047684436166No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT4460.10106091299244535No Hit

[OK]Adapter Content

Adapter graph