FastQCFastQC Report
Wed 8 May 2024
EGAF00007962835

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962835
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences441318
Total Bases14.5 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG47501.076321382767075No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC11070.2508395306785583No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT10770.24404171141897676No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG8970.20325479586148762No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAATCT8510.19283147299679596No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC8160.18490068386061753No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT7990.18104858628018797No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG7890.17878264652699413No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT7680.17402417304528708No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAATCC7520.17039866944017693No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT6530.14796586588355787No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGCAG5910.13391703941375607No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC5890.1334638514631173No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAACTG5490.12440009245034192No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAAGC5450.1234937165490644No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5360.12145437077118992No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAACTG5230.11850864909203794No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC5070.1148831454869278No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA4990.11307039368437272No Hit
AACGACCTGTACCGCCGCGTGATCAATCGTAAC4940.1119374238077758No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACAAC4690.10627257442479121No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT4660.10559279249883304No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAACTG4630.10491301057287487No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC4580.10378004069627797No Hit
CGTGTTCGTGGCCACTATCGTGCGCCATGGGGT4420.10015453709116783No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)