FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007962836

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962836
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences430438
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA20070.4662692420278879No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG17850.41469386996501234No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT11740.2727454360442154No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTT8980.20862470320928916No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG8240.19143291252166397No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG8160.18957434055543423No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCT8100.18818041158076193No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC7370.17122094238891547No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA7110.1651805834986688No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT7010.16285736854088162No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT5970.13869593297989488No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCT5730.13312021708120567No Hit
CTGGGAGGTCAGGAACACCAGGTAGCTGCGCTGAGCTTCAC5720.13288789558542694No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT5500.12777682267829513No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGG5270.1224334282753846No Hit
TGGACCGGTAACCGGACGGCCACGACGGCCGTTATCGAACA5000.11616074788935922No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT4800.11151431797378483No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCG4550.10570628057931689No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTG4400.10222145814263611No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT4340.1008275291679638No Hit

[OK]Adapter Content

Adapter graph