FastQCFastQC Report
Wed 8 May 2024
EGAF00007962837

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962837
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences430438
Total Bases14.2 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG46891.0893554937064107No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG20590.47834995980838124No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC11610.2697252565990921No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT10720.24904864347478614No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG8790.2042105947894935No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC8070.18748344709342576No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAATCT7970.1851602321356386No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAATCC7890.18330166016940883No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT7620.17702897978338344No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT7370.17122094238891547No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG7070.16425129751555392No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC6430.14938272178571596No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGCAG5960.13846361148411618No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC5710.13265557408964823No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAAGC5610.13033235913186103No Hit
AACGACCTGTACCGCCGCGTGATCAATCGTAAC5170.12011021331759743No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAACTG5090.11825164135136769No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT4960.11523146190624434No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAACTG4850.11267592545267843No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA4700.10919110301599766No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT4570.10617092357087432No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACAAC4380.10175681515107868No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAACTG4310.10013056468062764No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)