FastQCFastQC Report
Wed 8 May 2024
EGAF00007962838

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962838
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences444456
Total Bases18.2 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT12040.27089295678312364No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA9450.2126194718937308No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG8260.18584516802563134No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG7630.17167053656604928No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA5950.13387151934049712No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT5210.11722195222924205No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCT4860.10934715697391867No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)