FastQCFastQC Report
Wed 8 May 2024
EGAF00007962839

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962839
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences444456
Total Bases14.6 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG19710.44346346994978125No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC11930.2684180211314506No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG8130.1829202440736541No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC7490.16852061846391994No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT7270.16357074716057382No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5310.119471893730763No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT5240.11789693467969832No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACGTC5010.11272206922620012No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAACTG4850.10912216282376658No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)