FastQCFastQC Report
Wed 8 May 2024
EGAF00007962840

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962840
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences446302
Total Bases18.2 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT11820.26484308831239833No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA9160.20524219026578416No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG8090.1812673929312439No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG7730.17320110597756677No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA6330.14183221226882248No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCT5310.11897773256673733No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT4890.10956706445411403No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)