FastQCFastQC Report
Wed 8 May 2024
EGAF00007962841

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962841
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences446302
Total Bases14.7 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG20530.46000241988608614No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC11860.26573934241836245No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG8330.1866449175670286No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT7390.1655829460768717No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC7320.1640145013914345No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACGTC5570.12480338425550411No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5410.12121836783164763No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT4960.11113550913955125No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACAAC4540.10172484102692796No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)