FastQCFastQC Report
Wed 8 May 2024
EGAF00007962842

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962842
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences432696
Total Bases17.7 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT10860.2509845249320539No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA9120.21077153474957014No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG8190.1892783848244495No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG7780.17980291012627803No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA6050.13982102908277405No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCT4830.11162571412723944No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT4720.10908351359846173No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)