FastQCFastQC Report
Wed 8 May 2024
EGAF00007962843

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962843
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences432696
Total Bases14.2 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG20880.4825558821898053No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG20430.4721559709357147No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC10690.24705566956939748No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG8420.1945938950209847No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC7040.16270083384177345No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT6980.1613141790078947No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACGTC4990.11532346035091612No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT4820.11139460498825965No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAACTG4530.1046924399578457No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACAAC4510.10423022167988612No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)