FastQCFastQC Report
Wed 8 May 2024
EGAF00007962844

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962844
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences467790
Total Bases19.1 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG21160.4523397250903183No Hit
GATAACGAAGCTAGCGGAGGTCGGGGTAATGACCACAGAGG19750.4221979948267385No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT16420.35101220633190106No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA15750.3366895401782851No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT15480.33091771948951454No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT14920.31894653583873106No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT14810.31659505333589855No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG14270.3050514119583574No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT11760.2513948566664529No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT11610.24818828961713588No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT11220.2398512152889117No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGT7580.16203852155881912No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGT7100.15177750700100473No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT7090.1515637358643836No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG6520.13937878107697899No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC6450.13788238312063106No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGC5990.1280489108360589No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACG5840.12484234378674192No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCT5440.11629149832189659No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA5340.11415378695568525No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTT4750.10154128989503838No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)