FastQCFastQC Report
Wed 8 May 2024
EGAF00007962845

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962845
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences467790
Total Bases15.4 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG34860.7452061822612711No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT28780.615233331195622No Hit
ACCGATTGCGACCTGGATCCGATGGAAGGCAGC20050.42861112892537245No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC17300.3698240663545608No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT16920.36170076316295774No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC16620.3552876290643237No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG15100.32279441629791145No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT12440.26593129395668996No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC11700.2501122298467261No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC11670.2494709164368627No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA8000.17101690929690672No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCCGC7740.16545885974475727No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT7290.15583915859680625No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG6910.14771585540520318No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGTTC6840.14621945744885526No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT6820.145791915175613No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC6800.14536437290237073No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTCGT6670.142585348126296No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT5950.12719382628957437No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCTTC5830.12462857265012078No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5490.11736035400500223No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTGAA5140.10987836422326257No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACCAC4920.10517539921759765No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTTTC4770.10196883216828063No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)