FastQCFastQC Report
Wed 8 May 2024
EGAF00007962846

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962846
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences456079
Total Bases18.6 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG21310.46724361349678456No Hit
GATAACGAAGCTAGCGGAGGTCGGGGTAATGACCACAGAGG18500.4056314805110518No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT15990.35059715531739016No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT15380.33722227947351224No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA15350.33656449869430516No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG14020.3074028841494566No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT13830.3032369392144782No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT13690.30016729557817834No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT11600.2543419012934163No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT11420.2503952166181736No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT10300.22583806752777477No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGT7610.1668570576588705No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGT6990.1532629215552569No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC6700.14690437402292147No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT6670.14624659324371436No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG6540.1433962098671502No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGC5740.1258553890882939No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA5450.11949684155595851No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCT5420.1188390607767514No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGT5210.11423459532230162No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACG5160.1131382940236231No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAA4590.10064045921868799No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)