FastQCFastQC Report
Wed 8 May 2024
EGAF00007962847

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962847
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences456079
Total Bases15 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG34800.7630257038802488No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT28460.6240146992078126No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22250.4878540779119407No Hit
ACCGATTGCGACCTGGATCCGATGGAAGGCAGC18710.4102359459655016No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT17030.3734002223299034No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC16500.36177942856391104No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC15560.3411689641487549No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG13850.3036754597339496No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT12140.2661819553191443No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC11830.2593848872673375No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC10090.22123360207332501No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA8210.1800126732430127No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCCGC7470.16378741402257066No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGTTC6990.1532629215552569No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT6840.1499740176592213No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT6730.1475621548021286No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG6680.14646585350345007No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTCGT6550.1436154701268859No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC6420.14076508675032176No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT5790.12695169038697243No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTGAA5570.12212796467278694No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCTTC5560.12190870441305124No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTTTC4670.1023945412965736No Hit

[OK]Adapter Content

Adapter graph