FastQCFastQC Report
Wed 8 May 2024
EGAF00007962848

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962848
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences469527
Total Bases19.2 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG22030.46919559471553285No Hit
GATAACGAAGCTAGCGGAGGTCGGGGTAATGACCACAGAGG19930.42446973230506446No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT16750.3567419977977837No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA15590.3320362833234297No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT15570.33161032272904434No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT15040.32032236697783084No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT14970.3188315048974819No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG13840.29476473131470604No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT11640.24790906593231057No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT11410.24301051909687835No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT11370.24215859790810754No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGT7780.1656986712159258No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGT7280.15504965635629048No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC6830.14546554298261868No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG6600.14056699614718643No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT6520.13886315376964475No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGC6050.12885307980158756No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACG6010.12800115861281672No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCT5810.12374155266896258No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA5700.12139876939984283No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGT5360.11415743929529079No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTT4920.10478630621881171No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAA4780.1018045820581138No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)