FastQCFastQC Report
Wed 8 May 2024
EGAF00007962849

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962849
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences469527
Total Bases15.4 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG36150.7699237743516347No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT29720.6329774432567243No Hit
ACCGATTGCGACCTGGATCCGATGGAAGGCAGC20190.4300072200320748No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC17370.36994677622373157No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC16850.3588718007697108No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT16780.3573809386893618No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG15530.33075840154027353No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT12420.2645215291133417No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC12320.26239172614141465No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC10890.2319355436428576No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA8720.18571881915204025No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCCGC7850.16718953329627478No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT7200.15334581397874883No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG7140.1520679321955926No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGTTC6880.1465304444685822No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT6680.14227083852472808No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC6650.14163189763314996No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTCGT6590.1403540158499937No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCTTC6380.1358814296089469No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT5990.1275751980184313No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTGAA5680.1209728088054574No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTCGT5390.11479638018686891No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACCAC5310.11309253780932726No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5230.1113886954317856No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTTTC5060.1077680303795096No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)