FastQCFastQC Report
Wed 8 May 2024
EGAF00007962850

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962850
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences456492
Total Bases18.7 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG21050.46112527711329004No Hit
GATAACGAAGCTAGCGGAGGTCGGGGTAATGACCACAGAGG19450.4260753748148927No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT16210.3550993226606381No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT16040.35137527054143336No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA15560.3408602998519142No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT13970.3060294594428818No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT13890.304276964327962No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG13510.29595261253209254No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT11250.2464446255356063No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT11190.24513025419941642No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT11050.24206338774830663No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGT7690.16845859292167223No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG6680.14633334209580892No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGT6650.14567615642771395No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC6510.1426092899766042No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT6460.1415139805297793No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCT6150.1347230619594648No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA5810.12727495772105535No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGC5600.1226746580443907No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACG5100.11172156357614152No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGT5020.10996906846122168No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)