FastQCFastQC Report
Wed 8 May 2024
EGAF00007962851

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962851
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences456492
Total Bases15 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG36060.7899371730501301No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT28050.6144685996687784No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22040.4828124041604234No Hit
ACCGATTGCGACCTGGATCCGATGGAAGGCAGC19610.42958036504473246No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT17390.38094862560570614No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC16420.35969962233730274No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC15950.3494037135371485No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG14050.30778195455780166No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT11760.2576167818932205No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC11450.250825863322906No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC11060.24228244963767162No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA8570.18773603918579077No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCCGC7670.16802046914294227No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT7000.15334332255548838No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG7000.15334332255548838No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT6690.14655240398517388No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC6650.14567615642771395No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGTTC6600.14458084698088905No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTCGT6550.14348553753406412No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT6100.13362775251263986No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCTTC5640.12355090560185063No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTGAA5000.1095309446824917No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACCAC4950.10843563523566678No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTTTC4740.10383533555900212No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)