FastQCFastQC Report
Wed 8 May 2024
EGAF00007962861

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962861
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences487739
Total Bases16 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GACGCACTGACGGAAGGTCTGTCCGATGAACTG8570.1757087294639141No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT7420.15213054523013333No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC7300.14967021296226055No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT6620.1357283301109815No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6570.13470319166603448No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG6160.1262970564174692No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT5890.12076130881475543No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)