FastQCFastQC Report
Wed 8 May 2024
EGAF00007962863

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962863
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences473336
Total Bases15.6 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG23240.49098314939070764No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG7860.16605540250477463No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT7380.15591461456555172No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC7170.15147801984214174No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT7000.14788649078033364No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG6710.1417597647337198No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT5430.11471766356245881No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)