FastQCFastQC Report
Wed 8 May 2024
EGAF00007962865

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962865
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences489199
Total Bases16.1 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GACGCACTGACGGAAGGTCTGTCCGATGAACTG8680.17743290562736228No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT7510.15351625820984915No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC7270.14861027925241058No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG6770.13838948975774684No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT6670.13634533185881412No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5550.11345076339076736No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT5390.11018011075247497No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)