FastQCFastQC Report
Wed 8 May 2024
EGAF00007962867

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962867
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences477762
Total Bases15.7 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22950.4803647004156882No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG8630.18063387209531107No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT7330.15342367120030476No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC7240.15153988806141971No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT7200.1507026511108041No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG7200.1507026511108041No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT5940.12432968716641339No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)