FastQCFastQC Report
Wed 8 May 2024
EGAF00007962876

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962876
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences445389
Total Bases18.2 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC10700.2402394311489507No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC10510.23597349732481046No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT9720.21823619352970097No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGA8600.1930896362505585No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT8240.18500681426797697No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG8150.1829861087723316No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT6970.1564924144960922No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT6540.14683793268356424No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA6470.14526627285361784No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG5700.12797801472420736No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG5350.12011971557447534No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA5200.11675187308173304No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT4960.11136332509334536No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG4790.1075464369349041No Hit
AACAATGGCGGTGCCACGGTTTTCGATCGCGGTCGCGTTCA4620.10372954877646283No Hit
CTGTTCGGTTTCCAGTTCGCCTACGCTCACTTTGGTGTTGT4610.10350502594361334No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT4610.10350502594361334No Hit
GGCCTGTTCCTGGTTGGTAATGGACTGCGGAGTTTCGACTT4480.10058622911657No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)