FastQCFastQC Report
Wed 8 May 2024
EGAF00007962877

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962877
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences445389
Total Bases14.6 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT22450.5040537597470975No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG14520.32600715329745455No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT11270.25303723262137146No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC10950.24585250197018788No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT10570.23732063432190734No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC9720.21823619352970097No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACAAC9560.21464382820410924No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC7540.1692902159685129No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT6740.15132838934055398No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC5600.1257327863957125No Hit
TCCACCACTCTGGTAGACGTCAACAAAGATGCA5570.12505921789716404No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5560.12483469506431456No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC5430.12191589823727124No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT4970.11158784792619486No Hit
CTGTCTGCTGAGCAGCTGAACGTCACTGACGCC4770.10709739126920513No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)