FastQCFastQC Report
Wed 8 May 2024
EGAF00007962878

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962878
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences431542
Total Bases17.6 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT10550.2444721487132191No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC10320.23914242414411574No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC9850.22825124785073062No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT7840.18167408965987086No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGA7770.18005199957362203No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG7690.17819818233219478No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT7360.17055118621130738No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA6290.14575638060721785No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT6080.1408901103484713No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG5910.13695074871043839No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG5220.12096157500312832No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA5200.12049812069277151No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG4980.11540012327884655No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT4740.1098386715545648No Hit
CTGTTCGGTTTCCAGTTCGCCTACGCTCACTTTGGTGTTGT4710.10914349008902959No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT4680.10844830862349435No Hit
AACAATGGCGGTGCCACGGTTTTCGATCGCGGTCGCGTTCA4450.103118584054391No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)