FastQCFastQC Report
Wed 8 May 2024
EGAF00007962879

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962879
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences431542
Total Bases14.2 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT22090.5118852857891005No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21810.5053969254441051No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG15030.3482859142331453No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT11160.2586075051791019No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC11090.2569854150928531No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT10480.24285005862697026No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC10390.24076451423036457No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACAAC8640.20021226207414342No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC7610.17634436509076754No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT6370.1476101978486451No Hit
TCCACCACTCTGGTAGACGTCAACAAAGATGCA5380.12466920948598283No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC5250.12165675646866353No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC5130.11887603060652266No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT5060.11725394052027381No Hit
CTGTCTGCTGAGCAGCTGAACGTCACTGACGCC4730.10960694439938638No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)