FastQCFastQC Report
Wed 8 May 2024
EGAF00007962880

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962880
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences445525
Total Bases18.2 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT10810.2426350934291005No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC10580.23747264463273668No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC10530.23635037315526625No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG8120.18225688794119296No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGA7990.17933898209976992No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT7660.1719319903484653No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT7110.1595870040962909No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA6610.1483642893215869No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT6590.14791538073059873No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG5940.13332585152348353No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG5770.12951012850008417No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG5120.11492059929296898No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT5100.11447169070198081No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA5100.11447169070198081No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT4830.10841142472364064No Hit
AACAATGGCGGTGCCACGGTTTTCGATCGCGGTCGCGTTCA4590.10302452163178273No Hit
CTGTTCGGTTTCCAGTTCGCCTACGCTCACTTTGGTGTTGT4530.10167779585881825No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)